Back in the day, managing indirect taxes like VAT (Value-Added Tax) or GST (Goods and Services Tax) was more straightforward. You submitted your returns and hoped for the best. Now, with governments leveraging technology to track compliance, VAT/GST audits are becoming more common—and more thorough.
If you’re new to this, you’re probably wondering:
- Why are VAT/GST audits conducted?
- What happens during an audit?
- How can you prepare to avoid penalties?
In this article, we’ll break down what VAT/GST audits involve and how you can get audit-ready, saving your business time, stress, and potential financial losses.
Why VAT/GST Audits Happen
Tax authorities conduct audits to ensure businesses comply with VAT/GST regulations. The reasons for an audit might include:
- Discrepancies in filings: If your submitted returns don’t match the data authorities have on file, it could trigger an audit.
- High-risk industries: Sectors like eCommerce, construction, and international trade are often under closer scrutiny.
- Refund claims: If you’ve requested a large VAT/GST refund, expect authorities to double-check your figures.
- Random selection: Sometimes, it’s just the luck of the draw.
The good news? Most audits aren’t malicious. Authorities simply want to confirm your business is compliant. The key is to be prepared.
What Happens During a VAT/GST Audit?
An audit typically follows these stages:
1. Notice of Audit
The tax authority will send you an official notice, detailing the scope of the audit and what records they need. Common documents requested include:
- Sales invoices
- Purchase invoices
- VAT/GST returns
- Bank statements
- Contracts with suppliers or customers
2. Desk Review or Field Audit
Audits can either be:
- Desk-based, where you submit documents electronically or by post.
- Field-based, where auditors visit your premises to inspect records and systems.
3. Questions and Clarifications
Expect auditors to ask for explanations about discrepancies or unusual transactions. Be honest and provide clear evidence to back up your claims.
4. Outcome and Penalties
Once the audit is complete, you’ll receive a report. If errors are found, penalties may apply, ranging from fines to interest on unpaid VAT/GST. In severe cases, audits can escalate into investigations.
How to Prepare for a VAT/GST Audit
- Keep Records Organized – Good record-keeping is your best defence. Ensure your invoices, receipts, and returns are filed systematically and easily accessible.
- Conduct Regular Internal Audits – Spot and fix errors before they snowball. Periodically review your VAT/GST filings, cross-checking them against your accounts.
- Automate Where Possible – Tax software can reduce errors and ensure your filings are accurate. Many solutions also provide audit trails, making it easier to prove compliance. If you’re new to VAT/GST processes or want a deeper understanding, check out our Comprehensive Tax Compliance Guide for insights into managing VAT/GST across jurisdictions.
- Understand Your Industry Risks – Know the common pitfalls in your sector. For example, in eCommerce, VAT/GST on cross-border sales can be a minefield.
- Seek Professional Advice – A tax advisor can ensure your business complies with complex VAT/GST rules, especially if you operate in multiple jurisdictions. Yonda Tax’s expert advisory services are here to guide you through VAT/GST complexities, whether you’re preparing for an audit or optimizing your tax strategy.
What to Do If You’re Audited
- Don’t Panic
Audits are stressful, but preparation can help you navigate them smoothly. Stay calm and focused. - Respond Promptly
Submit requested documents on time and communicate clearly with auditors. Delays can raise red flags. - Be Transparent
If mistakes are found, own up to them. Most authorities are more lenient with businesses that cooperate and show a willingness to correct errors. - Learn from the Process
Use the audit as an opportunity to identify weaknesses in your tax processes and improve them.
Simplifying VAT/GST Compliance
VAT/GST compliance doesn’t have to be a headache. With the right tools and guidance, you can reduce your audit risk and stay on top of your obligations.

“Automating VAT/GST compliance can save businesses countless hours and significantly reduce errors—especially for companies operating in multiple jurisdictions.” – Gareth Kobrin, Global Tax Expert
Yonda Tax is your partner in simplifying VAT/GST compliance. Our end-to-end solution combines cutting-edge software with dedicated tax experts to help you:
- Automate VAT/GST filings and reporting
- Monitor compliance across multiple jurisdictions
- Prepare for and manage audits seamlessly
Discover Yonda Tax’s Compliance Solutions
Let us take the stress out of VAT/GST management, so you can focus on growing your business.